Igor Kozlovskii
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Structural bioinformatics · Deep learning

Igor Kozlovskii

Structure-based machine learning for molecular recognition — binding-site prediction, 3D representations, generative design.

Igor Kozlovskii


Research

01

Spatiotemporal identification of druggable binding sites using deep learning

Communications Biology · 2020 · doi:10.1038/s42003-020-01350-0

From structure to prediction: a protein conformation voxelized onto a 3D grid, passed through a 3D CNN that outputs per-voxel binding-site scores.

02

Protein-Peptide Binding Site Detection Using 3D Convolutional Neural Networks

JCIM · 2021 · doi:10.1021/acs.jcim.1c00475

03

Structure-based deep learning for binding site detection in nucleic acid macromolecules

NAR Genomics and Bioinformatics · 2021 · doi:10.1093/nargab/lqab111

04

Multivalent ion binding site identification with structure-based deep learning

Communications Biology · 2026 · doi:10.1038/s42003-026-10659-1

BiteNetI pipeline: a protein structure voxelized by ion type, passed through a 3D CNN, producing per-voxel ion-binding predictions mapped back onto the structure.

05

Computational methods for binding site prediction on macromolecules

Quarterly Reviews of Biophysics · 2025 · doi:10.1017/S003358352500006X

Art

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